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A structure-aware deep model for prediction of protein-protein interactions and contact maps

Under Review, RECOMB 2021, 2021

Single-cell mosaicism analysis reveals cell-type-specific somatic mutational burden in AD

Under review, Nature, 2021

On the reticulate evolutionary history of the SARS-CoV-2genome

In preparation, 2021

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TreeFix-TP: Phylogenetic Error-Correction for Infectious Disease Transmission Network Inference

PSB 2021, 2021

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TreeFix-TP

TreeFix-TP is a program for reconstructing highly accurate transmission phylogenies, i.e., phylogenies depicting the evolutionary relationships between infectious disease strains (viral or bacterial) transmitted between different hosts. Read more

D-SCRIPT

D-SCRIPT is a deep learning method for predicting a physical interaction between two proteins given just their sequences. Read more

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Theory of Computation (TA)

Undergraduate course, University of Connecticut, Department of EECS, 2019