Talks

Multimodal biomolecular foundation models advance prediction of protein structure, function, and dynamics @ Harvard University, Chemistry and Chemical Biology (2026)

Adapting Biological Foundation Models: From Molecules to Systems @ UC San Diego, HDSI (2026)

Proteomics at genome scale: connecting molecules to systems with biological foundation models @ Helmholtz Munich (2026)

Proteomics at genome scale: connecting molecules to systems with biological foundation models @ Johns Hopkins University, Biomedical Engineering (2026)

Proteomics at genome scale: connecting molecules to systems with biological foundation models @ European Molecular Biology Lab (2026)

Learning Protein Dynamics at Proteome Scale @ MLCB (2025)

Integrating systems and structural biology at the scale of the genome @ AITHYRA (2025)

Learning the functional interactome of non-model organisms with PHILHARMONIC @ RECOMB (2025)

RocketSHP: Towards ultra-fast genome-scale prediction of dynamic protein properties @ Biophysical Society (2025)

Thesis Defense @ MIT, EECS (2024)

Learning the Language of Biomolecular Interactions @ St. Jude's Children's Research Hospital (2024)

Learning the Language of Biomolecular Interactions @ Flatiron Institute, Center for Computational Biology (2024)

Learning the Language of Biomolecular Interactions @ MIT, Computational and Systems Biology Seminar (2024)

Learning the Language of Biomolecular Interactions @ UC San Diego, Department of Medicine (2024)

Learning the Language of Biomolecular Interactions @ Dana Farber Cancer Institute (2024)

TT3D: Leveraging Pre-Computed Protein 3D Sequence Models to Predict Protein-Protein Interactions @ ISMB (2023)

Topsy-Turvy: integrating a global view into sequence-based PPI prediction @ ISMB (2022)

D-SCRIPT: Translating genome to phenome with structure-based PPI prediction @ RECOMB (2021)

TreeFix-TP: Phylogenetic error-correction for infectious disease transmission network inference @ PSB (2021)